[rat-forum] genome-wide genotyping in rats

Kwitek, Anne E anne-kwitek at uiowa.edu
Tue Feb 7 17:02:13 CST 2012


Hi Elaine
What strains are involved in your cross? I have generated a custom Illumina chip (1536 SNPs) for a 'medium' density panel for mapping in crosses. Happy to discuss it offline to see if it might fit your needs.
Best
Anne

Anne E. Kwitek, Ph.D.
Associate Professor
Dept. of Pharmacology
Dept. of Internal Medicine
University of Iowa
3111B MERF
375 Newton Rd.
Iowa City, IA 52242
anne-kwitek at uiowa.edu<mailto:anne-kwitek at uiowa.edu>
P: (319) 384-2934
F: (319) 384-3082

From: rat-forum-bounces at mcw.edu [mailto:rat-forum-bounces at mcw.edu] On Behalf Of Remmers, Elaine (NIH/NHGRI) [E]
Sent: Tuesday, February 07, 2012 10:26 AM
To: 'rat-forum at mcw.edu'
Subject: [rat-forum] genome-wide genotyping in rats

What is the current best way to do genome-wide genotyping in rats?  Is there a SNP chip that can be used for mapping in a backcross collection?

Elaine

Elaine F. Remmers, Ph.D.
Staff Scientist
Inflammatory Disease Section, NHGRI, NIH, DHHS
Building 10 CRC East/Room B2-5235A
10 Center Drive - MSC 1849
Bethesda, MD 20892-1849



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